PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G061900.1
Common NameB456_001G061900, LOC105786591
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 1589aa    MW: 180137 Da    PI: 9.0312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G061900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003514981520323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          Cp   Cgk F ++ +L++H r+H
  Gorai.001G061900.1 1498 CPvkGCGKKFFSHKYLVQHRRVH 1520
                          9999*****************99 PP

2zf-C2H212.40.0004915561582123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C+   Cg++F+  s++ rH r+  H
  Gorai.001G061900.1 1556 YVCGeeGCGQTFRFVSDFSRHKRKtgH 1582
                          99********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005455.3E-152465IPR003349JmjN domain
PROSITE profilePS5118313.5362566IPR003349JmjN domain
PfamPF023753.6E-142659IPR003349JmjN domain
SMARTSM005588.1E-48200369IPR003347JmjC domain
PROSITE profilePS5118433.284200369IPR003347JmjC domain
SuperFamilySSF511975.22E-26214386No hitNo description
PfamPF023736.4E-35233352IPR003347JmjC domain
SMARTSM003557.914731495IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.36214961525IPR007087Zinc finger, C2H2
SuperFamilySSF576674.78E-614961533No hitNo description
SMARTSM003550.004514961520IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-514971524IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028014981520IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-815251550IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001415261550IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74115261555IPR007087Zinc finger, C2H2
PROSITE patternPS00028015281550IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-915361580No hitNo description
Gene3DG3DSA:3.30.160.607.0E-915511579IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.7615561582IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.88415561587IPR007087Zinc finger, C2H2
PROSITE patternPS00028015581582IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1589 aa     Download sequence    Send to blast
MACSSHHSLE QSQEAFSWLK SMPLAPEYRP TLAEFQDPIA YIFKIEKEAS QYGICKIIPP  60
VPPASKKTAI GNLNRSLLVR AEANASSDLK PTPTFTTRQQ QIGFCPRKPR PVQKPVWQSG  120
EYYTFQEFEA KAKSFERNYL KKYSKKGTLS ALEVETLFWK ATVDKPAMVE YANDMPGSAF  180
VPLNPKKSSG GGREAGEGVT VGETPWNMRA VSRAKGSLLR FMKEEIPGVT SPMVYIAMLF  240
SWFAWHVEDH DLHSLNYLHM GAGKTWYGVP RDAAVAFEEV VRLDGYGGEF NPLVTFSTLG  300
EKTTVMSPEV FLHAGIPCCR LVQNAGEFVV TFPRAYHSGF SHGFNFGEAA NIATPEWLRV  360
ARDAAIRRAS INYPPMVSHF QLLYDLALEL CSRIPMSISA KPKSSRLKDK RKSEGENLVK  420
ELFVQNLIQN NNLLHILGKG SSVVLLPKSS SDISLCSHLR CQSRINPRMS LSLYKDIIKS  480
SKDVGSDETV IGGNEEIKGI KGFYSVKGNF ASMYEGNRDS SFRGNDYSCR FPSQTSNTTR  540
ERDSAILDDA LPDQRLFSCV TCGILCFACV AVLQPTDQAA RYLMSADCSF FNDWTVGSGV  600
THDGFNAAHG DAITSEQNPC SRRMNKSAPN SLYDVSVQPV DSKFRMGDQS NQVLEDTEKR  660
GESSALGLLA STYGNSSDSE EDLPEPNATI FHDETNPTNV SPERKIQYND SGFSPSDVNT  720
SRNPSLSRLD SEEESPFDIK NGSPETFDPD LEFKTDNLIS RRSNGLEDKF RDPMTSSHVN  780
PNYSRAAHGI EKMRFSMAVL PMENVDIPFV QRTDEDSSRM HVFCLEHAVE VEQQLRQIGG  840
VQVFLLCHPE YPKIEAEAKL VAEELGIDYP WNDILFGDAT KDDKERIQSA LDSEDAIPGN  900
GDWAVKLGIN LFYSANLSRS TLYSKQMPYN WIIYSAFGRN SSDSSLKKLN VYGRRSGKPR  960
KVVVGKWCGR VWMSNQVHPF LAQRDSEEQE QERSFHAQAI SDENVERKPE NVPKAETMKV  1020
VNRKRKSRAE ITLNKKVKRV ESEGAVSDDS LDGSSLRQQQ IVFRGKKPRL VKKEEAVSCD  1080
LLEDDSLLRH WNLSRNRRAK FIERENAESE DAEEDFTHQQ QRSNLRGRHH KYIEEDDEVS  1140
GDLHNESSLK QYRRTPRSLQ AKFLDGENGV SDDEQEEISH KLHRRIPRGK QIKSSKRNTA  1200
VSDDSLKQYR RMRKGKQTKV FERDDAMSDY ASDDDSQYQI RRIPRGKQMK CMERYDAFSD  1260
DSVEDNSQQQ HRRILSSKAA KFTERRRVHR SQLTEFIETE DAVSSDSPDD NSSLRQPRRI  1320
PRSKQPEILE REDAISDDSL DGSHQSNRSL RNRKKKGPTL CQMKRETAQN VKQVKRRSTE  1380
QVISQRVKQE TPQNRNTKTK QTARHCSSSS DEDEIEGGPS TRLRKRTRKP LKQPETKPKE  1440
KKQAGKKKVK NALNSKTLSG QNSAKVRDEE VEYQCDMEGC SMSFGSKQAL ILHKRNICPV  1500
KGCGKKFFSH KYLVQHRRVH LDDRPLKCPW KGCKMTFKWA WARTEHIRVH TGARPYVCGE  1560
EGCGQTFRFV SDFSRHKRKT GHSGKKGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_B3e-47233877351HISTONE DEMETHYLASE JARID1C
5fwj_A3e-47233877351HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5776345e-98JX577634.1 Gossypium hirsutum clone NBRI_GE9494 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468557.10.0PREDICTED: lysine-specific demethylase JMJ705-like
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLA0A0D2LVF40.0A0A0D2LVF4_G
STRINGPOPTR_0015s10040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52592843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]